PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_03418.1_g00006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 227aa    MW: 25214.7 Da    PI: 5.1419
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_03418.1_g00006.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-19106156255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                              +y+GVr+++ +g+++AeIrdp++ng  +r++lg++ t+e+Aa a+++a+ +l+g
  Rsa1.0_03418.1_g00006.1 106 QYRGVRRRP-WGKFAAEIRDPKKNG--ARVWLGTYETPEDAAVAYDRAAFQLKG 156
                              69*******.***********9998..***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.21E-30106166No hitNo description
Gene3DG3DSA:3.30.730.105.5E-32106165IPR001471AP2/ERF domain
SMARTSM003803.7E-36106170IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23106165IPR016177DNA-binding domain
PROSITE profilePS5103223.907106164IPR001471AP2/ERF domain
PRINTSPR003674.4E-13107118IPR001471AP2/ERF domain
PfamPF008476.4E-13107156IPR001471AP2/ERF domain
PRINTSPR003674.4E-13146166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MSGFDYNDSA DPVDNGVNPP VFYRNPSFSN VILNDSWSDL PLSVDDSQDM AIYNTLRDAV  60
SSGWTPTVPP VSSPAEVTVR EEKTETVVVS SEASGSKAPP RQKGVQYRGV RRRPWGKFAA  120
EIRDPKKNGA RVWLGTYETP EDAAVAYDRA AFQLKGSKAK LNFPHLIGTC QYEPVRIRPR  180
RRSPEPSVSD YSSPEQKSVG HVEDGESSSD LDFSVNQSAY TYFDNRQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-31103164263ATERF1
3gcc_A3e-31103164263ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0023881e-101AC002388.3 Arabidopsis thaliana chromosome 2 clone T13E15 map m336, complete sequence.
GenBankAF3250891e-101AF325089.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840) mRNA, complete cds.
GenBankAF3705401e-101AF370540.1 Arabidopsis thaliana putative ethylene response element binding protein; EREBP (At2g44840; T13E15.15) mRNA, complete cds.
GenBankAY0724711e-101AY072471.1 Arabidopsis thaliana putative ethylene response element binding protein (EREBP) (At2g44840; T13E15.15) mRNA, complete cds.
GenBankCP0026851e-101CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752135.11e-150PREDICTED: ethylene-responsive transcription factor 13-like
RefseqXP_009144089.11e-150PREDICTED: ethylene-responsive transcription factor 13-like
SwissprotQ8L9K11e-115ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLA0A078CCV11e-150A0A078CCV1_BRANA; BnaA05g04380D protein
TrEMBLM4CKY71e-150M4CKY7_BRARP; Uncharacterized protein
STRINGBra004873.1-P1e-150(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.17e-97ethylene-responsive element binding factor 13